Gnirke, Andreas: search on Z-Library

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1

Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis

Soumillon, Magali, Necsulea, Anamaria, Weier, Manuela, Brawand, David, Zhang, Xiaolan, Gu, Hongcang, Barthès, Pauline, Kokkinaki, Maria, Nef, Serge, Gnirke, Andreas, Dym, Martin, de Massy, Bernard, Mi

Journal:

Year:

2013

Language:

english

File:

PDF, 3.59 MB

english, 2013

2

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay

Melnikov, Alexandre, Murugan, Anand, Zhang, Xiaolan, Tesileanu, Tiberiu, Wang, Li, Rogov, Peter, Feizi, Soheil, Gnirke, Andreas, Callan, Curtis G, Kinney, Justin B

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 1.18 MB

english, 2012

3

Charting a dynamic DNA methylation landscape of the human genome

Ziller, Michael J., Gu, Hongcang, Müller, Fabian, Donaghey, Julie, Tsai, Linus T.-Y., Kohlbacher, Oliver, De Jager, Philip L., Rosen, Evan D., Bennett, David A., Bernstein, Bradley E., Gnirke, Andreas

Journal:

Year:

2013

Language:

english

File:

PDF, 524 KB

english, 2013

4

Quantitative comparison of genome-wide DNA methylation mapping technologies

Bock, Christoph, Tomazou, Eleni M, Brinkman, Arie B, Müller, Fabian, Simmer, Femke, Gu, Hongcang, Jäger, Natalie, Gnirke, Andreas, Stunnenberg, Hendrik G, Meissner, Alexander

Journal:

Nature Biotechnology

Year:

2010

Language:

english

File:

PDF, 871 KB

english, 2010

5

Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.

van Berkum, Nynke L., Lieberman-Aiden, Erez, Williams, Louise, Imakaev, Maxim, Gnirke, Andreas, Mirny, Leonid A., Dekker, Job, Lander, Eric S.

Journal:

Journal of Visualized Experiments

Year:

2010

Language:

english

File:

PDF, 415 KB

english, 2010

6

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

Gnirke, Andreas, Melnikov, Alexandre, Maguire, Jared, Rogov, Peter, LeProust, Emily M, Brockman, William, Fennell, Timothy, Giannoukos, Georgia, Fisher, Sheila, Russ, Carsten

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 763 KB

english, 2009

7

Transfer of yeast artificial chromosomes from yeast to mammalian cells

Clare Huxley, Andreas Gnirke

Journal:

Year:

1991

Language:

english

File:

PDF, 729 KB

english, 1991

8

Corrigendum: Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

Guttman, Mitchell, Garber, Manuel, Levin, Joshua Z, Donaghey, Julie, Robinson, James, Adiconis, Xian, Fan, Lin, Koziol, Magdalena J, Gnirke, Andreas, Nusbaum, Chad

Journal:

Nature Biotechnology

Year:

2010

Language:

english

File:

PDF, 62 KB

english, 2010

9

High-throughput bisulfite sequencing in mammalian genomes

Zachary D. Smith, Hongcang Gu, Christoph Bock, Andreas Gnirke, Alexander Meissner

Journal:

Year:

2009

Language:

english

File:

PDF, 367 KB

english, 2009

10

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

Donaghey, Julie, Robinson, James, Adiconis, Xian, Fan, Lin, Koziol, Magdalena J, Gnirke, Andreas, Nusbaum, Chad, Guttman, Mitchell, Garber, Manuel, Levin, Joshua Z

Journal:

Nature Biotechnology

Year:

2010

Language:

english

File:

PDF, 952 KB

english, 2010

11

DNA Methylation Dynamics during In Vivo Differentiation of Blood and Skin Stem Cells

Bock, Christoph, Beerman, Isabel, Lien, Wen-Hui, Smith, Zachary D., Gu, Hongcang, Boyle, Patrick, Gnirke, Andreas, Fuchs, Elaine, Rossi, Derrick J., Meissner, Alexander

Journal:

Year:

2012

Language:

english

File:

PDF, 1.80 MB

english, 2012

12

Corrigendum: Comparative analysis of RNA sequencing methods for degraded or low-input samples

Adiconis, Xian, Borges-Rivera, Diego, Satija, Rahul, DeLuca, David S, Busby, Michele A, Berlin, Aaron M, Sivachenko, Andrey, Thompson, Dawn Anne, Wysoker, Alec, Fennell, Timothy, Gnirke, Andreas, Poch

Journal:

Year:

2014

Language:

english

File:

PDF, 96 KB

english, 2014

13

Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer

Smith, Zachary D., Shi, Jiantao, Gu, Hongcang, Donaghey, Julie, Clement, Kendell, Cacchiarelli, Davide, Gnirke, Andreas, Michor, Franziska, Meissner, Alexander

Journal:

Year:

2017

Language:

english

File:

PDF, 11.56 MB

english, 2017

14

Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution

Gu, Hongcang, Bock, Christoph, Mikkelsen, Tarjei S, Jäger, Natalie, Smith, Zachary D, Tomazou, Eleni, Gnirke, Andreas, Lander, Eric S, Meissner, Alexander

Journal:

Year:

2010

Language:

english

File:

PDF, 330 KB

english, 2010

15

Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling

Gnirke, Andreas, Meissner, Alexander, Gu, Hongcang, Smith, Zachary D, Bock, Christoph, Boyle, Patrick

Journal:

Nature Protocols

Year:

2011

Language:

english

File:

PDF, 781 KB

english, 2011

16

Comprehensive comparative analysis of strand-specific RNA sequencing methods

Levin, Joshua Z, Yassour, Moran, Adiconis, Xian, Nusbaum, Chad, Thompson, Dawn Anne, Friedman, Nir, Gnirke, Andreas, Regev, Aviv

Journal:

Year:

2010

Language:

english

File:

PDF, 1.48 MB

english, 2010

17

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

Rabani, Michal, Levin, Joshua Z, Fan, Lin, Adiconis, Xian, Raychowdhury, Raktima, Garber, Manuel, Gnirke, Andreas, Nusbaum, Chad, Hacohen, Nir, Friedman, Nir

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 963 KB

english, 2011

18

Transcription factor binding dynamics during human ES cell differentiation

Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander

Journal:

Year:

2015

Language:

english

File:

PDF, 8.59 MB

english, 2015

19

Microinjection of Intact 200- to 500-kb Fragments of YAC DNA into Mammalian Cells

Andreas Gnirke, Clare Huxley, Ken Peterson, Maynard V. Olson

Journal:

Year:

1993

File:

PDF, 803 KB

1993

20

Physical Calibration of Yeast Artificial Chromosome Contig Maps by RecA-Assisted Restriction Endonuclease (RARE) Cleavage

Andreas Gnirke, Shawn P. Iadonato, Pui-Yan Kwok, Maynard V. Olson

Journal:

Year:

1994

File:

PDF, 873 KB

1994

21

Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types

Ziller, Michael J., Müller, Fabian, Liao, Jing, Zhang, Yingying, Gu, Hongcang, Bock, Christoph, Boyle, Patrick, Epstein, Charles B., Bernstein, Bradley E., Lengauer, Thomas, Gnirke, Andreas, Meissner,

Journal:

Year:

2011

Language:

english

File:

PDF, 938 KB

english, 2011

22

Use of Yeast Artificial Chromosomes (YACs) for Studying Control of Gene Expression: Correct Regulation of the Genes of a Human β-Globin Locus YAC Following Transfer to Mouse Erythroleukemia Cell Lines

Kenneth R. Peterson, Galynn Zitnik, Clare Huxley, Christopher H. Lowrey, Andreas Gnirke, Kathleen A. Leppig, Thalia Papayannopoulou and George Stamatoyannopoulos

Journal:

Proceedings of the National Academy of Sciences

Year:

1993

Language:

english

File:

PDF, 1.39 MB

english, 1993

23

Targeted bisulfite sequencing of the dynamic DNA methylome

Ziller, Michael J., Stamenova, Elena K., Gu, Hongcang, Gnirke, Andreas, Meissner, Alexander

Journal:

Epigenetics & Chromatin

Year:

2016

Language:

english

File:

PDF, 1.17 MB

english, 2016

24

ZBED6, a Novel Transcription Factor Derived from a Domesticated DNA Transposon Regulates IGF2 Expression and Muscle Growth

Markljung, Ellen, Jiang, Lin, Jaffe, Jacob D., Mikkelsen, Tarjei S., Wallerman, Ola, Larhammar, Martin, Zhang, Xiaolan, Wang, Li, Saenz-Vash, Veronica, Gnirke, Andreas, Lindroth, Anders M., Barrés, Ro

Journal:

Year:

2009

Language:

english

File:

PDF, 3.72 MB

english, 2009

25

Transfer of the human HPRT and GART genes from yeast to mammalian cells by microinjection of YAC DNA

Andreas Gnirke, Clare Huxley

Journal:

Somatic Cell and Molecular Genetics

Year:

1991

Language:

english

File:

PDF, 777 KB

english, 1991

26

Fluorescence Energy Transfer Detection as a Homogeneous DNA Diagnostic Method

Xiangning Chen, Barbara Zehnbauer, Andreas Gnirke and Pui-Yan Kwok

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.60 MB

english, 1997

27

Genome-scale DNA methylation maps of pluripotent and differentiated cells

Meissner, Alexander, Mikkelsen, Tarjei S., Gu, Hongcang, Wernig, Marius, Hanna, Jacob, Sivachenko, Andrey, Zhang, Xiaolan, Bernstein, Bradley E., Nusbaum, Chad, Jaffe, David B., Gnirke, Andreas, Jaeni

Journal:

Year:

2008

Language:

english

File:

PDF, 3.06 MB

english, 2008

28

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

Georgia Giannoukos, Dawn M Ciulla, Katherine Huang, Brian J Haas, Jacques Izard, Joshua Z Levin, Jonathan Livny, Ashlee M Earl, Dirk Gevers, Doyle V Ward, Chad Nusbaum, Bruce W Birren, Andreas Gnirke

Journal:

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

29

Construction and Validation of Yeast Artificial Chromosome Contig Maps by RecA-Assisted Restriction Endonuclease Cleavage

Peter Lauer, Sandra S. Schneider and Andreas Gnirke

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.74 MB

english, 1998

30

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

Patrick Boyle, Kendell Clement, Hongcang Gu, Zachary D Smith, Michael Ziller, Jennifer L Fostel, Laurie Holmes, Jim Meldrim, Fontina Kelley, Andreas Gnirke, Alexander Meissner

Journal:

Year:

2012

Language:

english

File:

PDF, 1.68 MB

english, 2012

31

Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing

Kirby, Andrew, Gnirke, Andreas, Jaffe, David B, Barešová, Veronika, Pochet, Nathalie, Blumenstiel, Brendan, Ye, Chun, Aird, Daniel, Stevens, Christine, Robinson, James T, Cabili, Moran N, Gat-Viks, Ir

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 796 KB

english, 2013

32

Development and Validation of a Mass Spectrometry–Based Assay for the Molecular Diagnosis of Mucin-1 Kidney Disease

Blumenstiel, Brendan, DeFelice, Matthew, Birsoy, Ozge, Bleyer, Anthony J., Kmoch, Stanislav, Carter, Todd A., Gnirke, Andreas, Kidd, Kendrah, Rehm, Heidi L., Ronco, Lucienne, Lander, Eric S., Gabriel,

Journal:

The Journal of Molecular Diagnostics

Year:

2016

Language:

english

File:

PDF, 810 KB

english, 2016

33

Corrections: Use of Yeast Artificial Chromosomes (YACs) for Studying Control of Gene Expression: Correct Regulation of the Genes of a Human β-Globin Locus YAC Following Transfer to Mouse Erythroleukemia Cell Lines

Kenneth R. Peterson, Galynn Zitnik, Clare Huxley, Christopher H. Lowrey, Andreas Gnirke, Kathleen A. Leppig, Thalia Papayannopoulou and George Stamatoyannopoulos

Journal:

Proceedings of the National Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 117 KB

english, 1994

34

High throughput functional genomics: Identification of novel genes with tumor suppressor phenotypes

Kerstin Koenig-Hoffmann, Angelika L. Bonin-Debs, Irene Boche, Beate Gawin, Andrea Gnirke, Christoph Hergersberg, Frank Madeo, Michael Kazinski, Matthias Klein, Christian Korherr, Dieter Link, Sascha R

Journal:

International Journal of Cancer

Year:

2005

Language:

english

File:

PDF, 244 KB

english, 2005

35

Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines

Christoph Bock, Evangelos Kiskinis, Griet Verstappen, Hongcang Gu, Gabriella Boulting, Zachary D. Smith, Michael Ziller, Gist F. Croft, Mackenzie W. Amoroso, Derek H. Oakley, Andreas Gnirke, Kevin Egg

Journal:

Year:

2011

Language:

english

File:

PDF, 1.68 MB

english, 2011

36

Reprogramming Factor Expression Initiates Widespread Targeted Chromatin Remodeling

Richard P. Koche, Zachary D. Smith, Mazhar Adli, Hongcang Gu, Manching Ku, Andreas Gnirke, Bradley E. Bernstein, Alexander Meissner

Journal:

Year:

2011

Language:

english

File:

PDF, 1007 KB

english, 2011

37

A unique regulatory phase of DNA methylation in the early mammalian embryo

Smith, Zachary D., Chan, Michelle M., Mikkelsen, Tarjei S., Gu, Hongcang, Gnirke, Andreas, Regev, Aviv, Meissner, Alexander

Journal:

Year:

2012

Language:

english

File:

PDF, 927 KB

english, 2012

38

Expression of a human cDNA encoding a protein containing GAR synthetase, AIR synthetase, and GAR transformylase corrects the defects in mutant Chinese hamster ovary cells lacking these activities

Fu-Hsiung Chang, Tristan S. Barnes, David Schild, Andreas Gnirke, John Bleskan, David Patterson

Journal:

Somatic Cell and Molecular Genetics

Year:

1991

Language:

english

File:

PDF, 1.04 MB

english, 1991

39

Comparative analysis of RNA sequencing methods for degraded or low-input samples

Adiconis, Xian, Borges-Rivera, Diego, Satija, Rahul, DeLuca, David S, Busby, Michele A, Berlin, Aaron M, Sivachenko, Andrey, Thompson, Dawn Anne, Wysoker, Alec, Fennell, Timothy, Gnirke, Andreas, Poch

Journal:

Year:

2013

Language:

english

File:

PDF, 717 KB

english, 2013

40

genome from RNA-Seq data

Amit, Ido, Adiconis, Xian, Fan, Lin, Raychowdhury, Raktima, Chen, Zehua, Mauceli, Evan, Hacohen, Nir, Gnirke, Andreas, Rhind, Nicholas, Palma, Federica, Birren, Bruce W, Nusbaum, Chad, Lindblad-toh, K

Year:

2013

Language:

english

File:

PDF, 2.59 MB

english, 2013

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